.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "examples/data_collection/bob_visualize.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_examples_data_collection_bob_visualize.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_examples_data_collection_bob_visualize.py:


BoB Visualize
================

This example shows how to use the muscle force files to visualize the muscle force.

.. GENERATED FROM PYTHON SOURCE LINES 7-37

.. code-block:: default


    import os

    import matplotlib.pyplot as plt
    import numpy as np
    import pandas as pd

    import rofunc as rf

    input_path = '/home/lee/BoB_data/2022-12-03/BoB data/bench_press/'
    out_path = os.path.join(input_path, 'process')
    rf.oslab.create_dir(out_path)
    demo_path = os.path.join(input_path, "all_muscle_forces.csv")
    out_file_path = os.path.join(out_path, "all_muscle_forces_processed.csv")
    rf.oslab.delete_lines(demo_path, out_file_path, 1)
    data = pd.read_csv(out_file_path, index_col=0)

    # Pectoralis major clavicular; Pectoralis major sternocostal; Deltoideus clavicular; Deltoideus scapular;
    # Biceps femoris; Biceps femoris caput breve;
    muscle_name = 'Biceps femoris caput breve right'
    muscle_force_data = data.loc[:, muscle_name]
    n = 8
    muscle_force_data_process = np.convolve(muscle_force_data, np.ones((n,)) / n, mode='same')
    t = np.arange(0, len(muscle_force_data_process) / 10, 0.1, float)
    plt.plot(t, muscle_force_data_process)
    plt.title(muscle_name)
    plt.xlabel("t")
    plt.ylabel("muscle force")
    plt.savefig(os.path.join(out_path, muscle_name))
    plt.show()


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.000 seconds)


.. _sphx_glr_download_examples_data_collection_bob_visualize.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example




    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: bob_visualize.py <bob_visualize.py>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: bob_visualize.ipynb <bob_visualize.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_